/* -*- Mode: C++; tab-width: 2; indent-tabs-mode: nil; c-basic-offset: 2 -*- */ /* vim: set et sw=2 ts=2: */ /*************************************************************************** * export.cc * * Wed Jan 26 11:44:12 CET 2011 * Copyright 2011 Bent Bisballe Nyeng * deva@aasimon.org ****************************************************************************/ /* * This file is part of Pracro. * * Pracro is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * Pracro is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Pracro; if not, write to the Free Software * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA. */ #include "export.h" #include #include #include #ifndef WITHOUT_DB #include #include #include "fieldnamescanner.h" #include "configuration.h" #define SEP "\t" static std::string escape(std::string &str) { std::string out = "\""; std::string::iterator i = str.begin(); while(i != str.end()) { if(*i == '\"') out += "''"; else out += *i; i++; } out += "\""; return out; } class File { public: File(std::string n, fieldnames_t &f, pqxx::work &w) : work(w), name(n), fieldnames(f) { name += ".csf"; fp = fopen(name.c_str(), "w"); pos["id"] = 0; pos["patientid"] = 1; pos["time"] = 2; pos["template"] = 3; //printf("%s\n", n.c_str()); size_t idx = 4; fieldnames_t::iterator i = f.begin(); while(i != f.end()) { //printf("%s ", i->c_str()); pos[*i] = idx; idx++; i++; } // printf("\n"); output_header(); } ~File() { if(fp) fclose(fp); } void output_header() { beginrow(); addcell("id", "ID"); addcell("patientid", "Patient"); addcell("time", "Time"); addcell("template", "Template"); { pqxx::result result = work.exec("SELECT DISTINCT ON(name) name, caption FROM fieldnames" " WHERE extract='true';"); pqxx::result::const_iterator ri = result.begin(); for(unsigned int r = 0; r < result.size(); r++) { pqxx::result::tuple tuple = result.at(r); std::string name = tuple.at(0).c_str(); std::string caption = tuple.at(1).c_str(); addcell(name, caption); } } endrow(); } void beginrow() { cells.clear(); cells.insert(cells.begin(), pos.size(), ""); } void addcell(std::string key, std::string value) { if(pos.find(key) == pos.end()) return; cells[pos[key]] = value; } void endrow() { std::vector::iterator i = cells.begin(); while(i != cells.end()) { fprintf(fp, "%s"SEP, escape(*i).c_str()); i++; } fprintf(fp, "\n"); } private: pqxx::work &work; std::map pos; std::vector cells; std::string name; fieldnames_t &fieldnames; FILE *fp; }; static void export_prefix(std::string prefix) { std::map files; if(Conf::database_backend != "pgsql") { printf("ERROR: Export only available for the pgsql database backend.\n"); return; } std::string host = Conf::database_addr; std::string port = "";//Conf::database_port; std::string user = Conf::database_user;; std::string passwd = Conf::database_passwd; std::string dbname = "";//Conf::database_database; std::string cs; if(host.size()) cs += " host=" + host; if(port.size()) cs += " port=" + port; if(user.size()) cs += " user=" + user; if(passwd.size()) cs += " password=" + passwd; cs += " dbname=" + (dbname.size() ? dbname : "pracro"); pqxx::connection conn(cs); pqxx::work work(conn); std::set filter; { pqxx::result result = work.exec("SELECT DISTINCT name FROM fieldnames" " WHERE extract='true';"); pqxx::result::const_iterator ri = result.begin(); for(unsigned int r = 0; r < result.size(); r++) { pqxx::result::tuple tuple = result.at(r); std::string name = tuple.at(0).c_str(); filter.insert(name); //printf("filter: '%s'\n", name.c_str()); } } templates_t t = scanfieldnames(filter); /* templates_t::iterator ti = t.begin(); while(ti != t.end()) { printf("%s\n", ti->first.c_str()); fieldnames_t::iterator fi = ti->second.begin(); while(fi != ti->second.end()) { printf("\t%s\n", (*fi).c_str()); fi++; } ti++; } */ { pqxx::result result = work.exec("SELECT * FROM commits WHERE template LIKE '"+prefix+"%'" " AND status='committed' ORDER BY patientid, timestamp;"); pqxx::result::const_iterator ri = result.begin(); for(unsigned int r = 0; r < result.size(); r++) { pqxx::result::tuple tuple = result.at(r); std::string patientid = tuple.at(0).c_str(); std::string templ = tuple.at(1).c_str(); std::string version = tuple.at(2).c_str(); std::string timestamp = tuple.at(3).c_str(); std::string uid = tuple.at(4).c_str(); std::string status = tuple.at(5).c_str(); if(files.find(templ) == files.end()) { files[templ] = new File(templ, t[templ], work); } files[templ]->beginrow(); files[templ]->addcell("id", uid); files[templ]->addcell("patientid", patientid); files[templ]->addcell("template", templ); time_t t = atol(timestamp.c_str()); std::string timestr = ctime(&t); if(timestr[timestr.size() - 1] == '\n') timestr = timestr.substr(0, timestr.size() - 1); files[templ]->addcell("time", timestr.c_str()); DEBUG(export, "%s %s %s\n", timestamp.c_str(), patientid.c_str(), templ.c_str()); { pqxx::result result = work.exec("SELECT f.name, f.value" " FROM transactions t, fields f, fieldnames n" " WHERE t.cid='"+uid+"' AND f.transaction=t.uid" " AND f.name=n.name AND n.extract='true'" " ORDER BY t.timestamp;"); pqxx::result::const_iterator ri = result.begin(); for(unsigned int r = 0; r < result.size(); r++) { pqxx::result::tuple tuple = result.at(r); std::string name = tuple.at(0).c_str(); std::string value = tuple.at(1).c_str(); files[templ]->addcell(name, value); } } files[templ]->endrow(); } } std::map::iterator i = files.begin(); while(i != files.end()) { delete i->second; i++; } } #endif/* WITHOUT_DB */ static const char usage_str[] = " help Prints this helptext.\n" " prefix p Export all templates matching the prefix p.\n" ; void macrotool_export(std::vector params) { if(params.size() < 1) { printf("%s", usage_str); return; } DEBUG(export, "export: %s\n", params[0].c_str()); if(params[0] == "prefix") { if(params.size() != 2) { printf("The command 'prefix' needs a parameter.\n"); printf("%s", usage_str); return; } #ifndef WITHOUT_DB export_prefix(params[1]); #endif/* WITHOUT_DB */ return; } if(params[0] == "help") { printf("%s", usage_str); return; } printf("Unknown command '%s'\n", params[0].c_str()); printf("%s", usage_str); return; } #ifdef TEST_EXPORT //Additional dependency files //deps: //Required cflags (autoconf vars may be used) //cflags: //Required link options (autoconf vars may be used) //libs: #include "test.h" TEST_BEGIN; // TODO: Put some testcode here (see test.h for usable macros). TEST_END; #endif/*TEST_EXPORT*/